Index

A

area() (bibench.bicluster.Bicluster method)

array() (bibench.bicluster.Bicluster method)

B

bbc() (in module bibench.algorithms.bbc) bibench.__init__ (module) bibench.algorithms (module) bibench.algorithms.bbc (module) bibench.algorithms.coalesce (module) bibench.algorithms.cpb (module) bibench.algorithms.opsm (module) bibench.algorithms.qubic (module) bibench.algorithms.wrapper (module) bibench.bicluster (module)

bibench.datasets (module) bibench.datasets.io (module) bibench.util (module) bibench.validation (module) bibench.validation.external (module) Bicluster (class in bibench.bicluster) bicluster_algorithm() (in module bibench.bicluster) BiclusterList (class in bibench.bicluster) bootstrap() (in module bibench.util)

C

calculate_bicluster_group_matrix() (in module bibench.validation.external) calculate_distance_matrix() (in module bibench.validation.external) coalesce() (in module bibench.algorithms.coalesce) col_pair_count() (in module bibench.validation.external)

copy() (bibench.bicluster.Bicluster method) cpb() (in module bibench.algorithms.cpb) cpb_filter() (in module bibench.algorithms.cpb)

D

dict_combinations() (in module bibench.util)

difference() (bibench.bicluster.Bicluster method)

E

ecludian_distance() (in module bibench.validation.external) EmptyList

ExpressionArray (class in bibench.datasets.io) ExternalError

F

f_measure() (in module bibench.validation.external) f_measure_list() (in module bibench.validation.external) filter() (in module bibench.bicluster)

filter_cols() (bibench.bicluster.Bicluster method) filter_rows() (bibench.bicluster.Bicluster method) flatten() (in module bibench.util)

G

get_distance_matrices() (in module bibench.validation.external) get_hidden_dir() (in module bibench.util) get_row_col_matrices() (in module bibench.bicluster)

get_upperHalf() (in module bibench.validation.external) grouper() (in module bibench.util)

H

hubert_statistics() (in module bibench.validation.external)

I

internal_index_score() (in module bibench.validation.external) intersection() (bibench.bicluster.Bicluster method)

isiterable() (in module bibench.util) issubset() (bibench.bicluster.Bicluster method)

J

jaccard() (in module bibench.validation.external)

jaccard_list() (in module bibench.validation.external)

L

ListScore (class in bibench.validation.external)

M

make_index_map() (in module bibench.util)

modified_relevance() (in module bibench.validation.external)

O

opsm() (in module bibench.algorithms.opsm)

overlap() (bibench.bicluster.Bicluster method)

P

prelic_list() (in module bibench.validation.external)

Q

qubic() (in module bibench.algorithms.qubic)

R

read_biclusters() (in module bibench.bicluster) read_expression_data() (in module bibench.datasets.io) recovery (bibench.validation.external.ListScore attribute) recovery() (in module bibench.validation.external) recovery_relevance_list() (in module bibench.validation.external)

relevance (bibench.validation.external.ListScore attribute) relevance() (in module bibench.validation.external) row_jaccard() (in module bibench.validation.external) row_pair_count() (in module bibench.validation.external)

S

shape() (bibench.bicluster.Bicluster method) shuffle() (in module bibench.util)

symmetric_difference() (bibench.bicluster.Bicluster method)

U

union() (bibench.bicluster.Bicluster method)

W

which() (in module bibench.util) wrapper_helper() (in module bibench.algorithms.wrapper) WrapperException write_biclusters() (in module bibench.bicluster) write_bicoverlapper() (in module bibench.datasets.io)

write_david_list() (in module bibench.datasets.io) write_david_multilist() (in module bibench.datasets.io) write_expression_data() (in module bibench.datasets.io) write_pcl_dataset() (in module bibench.datasets.io)

Z

zdumps() (in module bibench.util)

zloads() (in module bibench.util)